Note that at the moment, only the CPU version of f5c can be installed through Docker or Conda. If you have experience with nvidia docker or setting up CUDA enabled programmes on Conda, help us to set f5c GPU version up on those.
Installing Docker Image
To build a docker image
git clone https://github.com/hasindu2008/f5c && cd f5c
docker build .
Note down the image uuid and run f5c as :
docker run -v /path/to/local/data/data/:/data/ -it :image_id ./f5c call-methylation -r /data/reads.fa -b /data/alignments.sorted.bam -g /data/ref.fa
Installing through Conda
To install through Conda
conda create -n ont_env -c bioconda -c conda-forge f5c