cornetto

Cornetto

Cornetto is a method for adaptive genome assembly using nanopore sequencing from Oxford Nanopore Technologies (ONT). This repository documents the Cornetto bioinformatics protocol and contains the source code for Cornetto (a programme written in C and a collection of shell scripts).

Documentation: https://hasindu2008.github.io/cornetto

Publication and data

• Preprint link
• Talk video link
• Datasets

Cornetto bioinformatics protocol

See here.

Cornetto toolkit

See here.

Acknowledgement

• cornetto uses klib which is under the MIT license.
• minidot from miniasm package (MIT license) has been integrated as cornetto minidot at src/minidot.
• sdust programme from https://github.com/lh3/sdust is integrated as cornetto sdust at src/sdust.
• telofind, telobreaks and telowin subcommands are implemented based on VGP telomere scripts license under BSD.

This site is open source. Improve this page.